Install

Mamba (recommended)

Install mamba via miniforge

curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh"
bash Miniforge3-$(uname)-$(uname -m).sh

Next, configure strict channel priority:

conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda config --set channel_priority strict

Install mess with mamba

mamba create -n mess mess

Git

Install Mamba as shown before, clone the mess repo and install via pip.

git clone https://github.com/metagenlab/MeSS
pip install -e MeSS

Docker

github container registry

docker pull ghcr.io/metagenlab/mess:latest

biocontainers

docker pull quay.io/biocontainers/mess:0.8.2--pyhdfd78af_0